Lines Matching refs:coverage
46 _coverages_database: a list of coverage entities seen previously.
47 _alpha: replication count if new coverage is seen.
48 _beta: replication parameter if no coverage is seen.
57 def _IsNewCoverage(self, coverage, add=False):
58 """Returns True iff the 'coverage' is new.
61 coverage: int, a coverage entity
62 add: boolean, true to add coverage to the db if it's new.
69 for entity in coverage:
86 coverages: a list of the coverage data where coverage data is a list which
98 for gene, coverage in zip(genes, coverages):
99 if self._IsNewCoverage(coverage, add=True):
