math/linear/SparseFieldVector.java

/*
 * Licensed to the Apache Software Foundation (ASF) under one or more
 * contributor license agreements.  See the NOTICE file distributed with
 * this work for additional information regarding copyright ownership.
 * The ASF licenses this file to You under the Apache License, Version 2.0
 * (the "License"); you may not use this file except in compliance with
 * the License.  You may obtain a copy of the License at
 *
 *      http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */
package org.apache.commons.math.linear;

import java.io.Serializable;
import java.lang.reflect.Array;

import org.apache.commons.math.Field;
import org.apache.commons.math.FieldElement;
import org.apache.commons.math.MathRuntimeException;
import org.apache.commons.math.exception.util.LocalizedFormats;
import org.apache.commons.math.util.OpenIntToFieldHashMap;

/**
 * This class implements the {@link FieldVector} interface with a {@link OpenIntToFieldHashMap} backing store.
 * @param <T> the type of the field elements
 * @version $Revision: 983921 $ $Date: 2010-08-10 12:46:06 +0200 (mar. 10 aot 2010) $
 * @since 2.0
 */
public class SparseFieldVector<T extends FieldElement<T>> implements FieldVector<T>, Serializable {

    /**
     *  Serial version id
     */
    private static final long serialVersionUID = 7841233292190413362L;
    /** Field to which the elements belong. */
    private final Field<T> field;
    /** Entries of the vector. */
    private final OpenIntToFieldHashMap<T> entries;
    /** Dimension of the vector. */
    private final int virtualSize;

    /**
     * Build a 0-length vector.
     * <p>Zero-length vectors may be used to initialize construction of vectors
     * by data gathering. We start with zero-length and use either the {@link
     * #SparseFieldVector(SparseFieldVector, int)} constructor
     * or one of the <code>append</code> method ({@link #append(FieldElement)},
     * {@link #append(FieldElement[])}, {@link #append(FieldVector)},
     * {@link #append(SparseFieldVector)}) to gather data into this vector.</p>
     * @param field field to which the elements belong
     */
    public SparseFieldVector(Field<T> field) {
        this(field, 0);
    }


    /**
     * Construct a (dimension)-length vector of zeros.
     * @param field field to which the elements belong
     * @param dimension Size of the vector
     */
    public SparseFieldVector(Field<T> field, int dimension) {
        this.field = field;
        virtualSize = dimension;
        entries = new OpenIntToFieldHashMap<T>(field);
    }

    /**
     * Build a resized vector, for use with append.
     * @param v The original vector
     * @param resize The amount to resize it
     */
    protected SparseFieldVector(SparseFieldVector<T> v, int resize) {
        field = v.field;
        virtualSize = v.getDimension() + resize;
        entries = new OpenIntToFieldHashMap<T>(v.entries);
    }


    /**
     * Build a vector with known the sparseness (for advanced use only).
     * @param field field to which the elements belong
     * @param dimension The size of the vector
     * @param expectedSize The expected number of non-zero entries
     */
    public SparseFieldVector(Field<T> field, int dimension, int expectedSize) {
        this.field = field;
        virtualSize = dimension;
        entries = new OpenIntToFieldHashMap<T>(field,expectedSize);
    }

    /**
     * Create from a Field array.
     * Only non-zero entries will be stored
     * @param field field to which the elements belong
     * @param values The set of values to create from
     */
    public SparseFieldVector(Field<T> field, T[] values) {
        this.field = field;
        virtualSize = values.length;
        entries = new OpenIntToFieldHashMap<T>(field);
        for (int key = 0; key < values.length; key++) {
            T value = values[key];
            entries.put(key, value);
        }
    }


    /**
     * Copy constructor.
     * @param v The instance to copy from
     */
    public SparseFieldVector(SparseFieldVector<T> v) {
        field = v.field;
        virtualSize = v.getDimension();
        entries = new OpenIntToFieldHashMap<T>(v.getEntries());
    }

    /**
     * Get the entries of this instance.
     * @return entries of this instance
     */
    private OpenIntToFieldHashMap<T> getEntries() {
        return entries;
    }

    /**
     * Optimized method to add sparse vectors.
     * @param v vector to add
     * @return The sum of <code>this</code> and <code>v</code>
     * @throws IllegalArgumentException If the dimensions don't match
     */
    public FieldVector<T> add(SparseFieldVector<T> v) throws IllegalArgumentException {
        checkVectorDimensions(v.getDimension());
        SparseFieldVector<T> res = (SparseFieldVector<T>)copy();
        OpenIntToFieldHashMap<T>.Iterator iter = v.getEntries().iterator();
        while (iter.hasNext()) {
            iter.advance();
            int key = iter.key();
            T value = iter.value();
            if (entries.containsKey(key)) {
                res.setEntry(key, entries.get(key).add(value));
            } else {
                res.setEntry(key, value);
            }
        }
        return res;

    }


    /** {@inheritDoc} */
    public FieldVector<T> add(T[] v) throws IllegalArgumentException {
        checkVectorDimensions(v.length);
        SparseFieldVector<T> res = new SparseFieldVector<T>(field,getDimension());
        for (int i = 0; i < v.length; i++) {
            res.setEntry(i, v[i].add(getEntry(i)));
        }
        return res;
    }

    /**
     * Construct a vector by appending a vector to this vector.
     * @param v vector to append to this one.
     * @return a new vector
     */
    public FieldVector<T> append(SparseFieldVector<T> v) {
        SparseFieldVector<T> res = new SparseFieldVector<T>(this, v.getDimension());
        OpenIntToFieldHashMap<T>.Iterator iter = v.entries.iterator();
        while (iter.hasNext()) {
            iter.advance();
            res.setEntry(iter.key() + virtualSize, iter.value());
        }
        return res;
    }

    /** {@inheritDoc} */
    public FieldVector<T> append(FieldVector<T> v) {
        if (v instanceof SparseFieldVector<?>) {
            return append((SparseFieldVector<T>) v);
        } else {
            return append(v.toArray());
        }
    }

    /** {@inheritDoc} */
    public FieldVector<T> append(T d) {
        FieldVector<T> res = new SparseFieldVector<T>(this, 1);
        res.setEntry(virtualSize, d);
        return res;
     }

    /** {@inheritDoc} */
    public FieldVector<T> append(T[] a) {
        FieldVector<T> res = new SparseFieldVector<T>(this, a.length);
        for (int i = 0; i < a.length; i++) {
            res.setEntry(i + virtualSize, a[i]);
        }
        return res;
     }

    /** {@inheritDoc} */
    public FieldVector<T> copy() {
        return new SparseFieldVector<T>(this);
   }

    /** {@inheritDoc} */
    public T dotProduct(FieldVector<T> v) throws IllegalArgumentException {
        checkVectorDimensions(v.getDimension());
        T res = field.getZero();
        OpenIntToFieldHashMap<T>.Iterator iter = entries.iterator();
        while (iter.hasNext()) {
            iter.advance();
            res = res.add(v.getEntry(iter.key()).multiply(iter.value()));
        }
        return res;
    }

    /** {@inheritDoc} */
    public T dotProduct(T[] v) throws IllegalArgumentException {
        checkVectorDimensions(v.length);
        T res = field.getZero();
        OpenIntToFieldHashMap<T>.Iterator iter = entries.iterator();
        while (iter.hasNext()) {
            int idx = iter.key();
            T value = field.getZero();
            if (idx < v.length) {
                value = v[idx];
            }
            res = res.add(value.multiply(iter.value()));
        }
        return res;
     }

    /** {@inheritDoc} */
    public FieldVector<T> ebeDivide(FieldVector<T> v)
        throws IllegalArgumentException {
        checkVectorDimensions(v.getDimension());
        SparseFieldVector<T> res = new SparseFieldVector<T>(this);
        OpenIntToFieldHashMap<T>.Iterator iter = res.entries.iterator();
        while (iter.hasNext()) {
            iter.advance();
            res.setEntry(iter.key(), iter.value().divide(v.getEntry(iter.key())));
        }
        return res;
    }

    /** {@inheritDoc} */
    public FieldVector<T> ebeDivide(T[] v) throws IllegalArgumentException {
        checkVectorDimensions(v.length);
        SparseFieldVector<T> res = new SparseFieldVector<T>(this);
        OpenIntToFieldHashMap<T>.Iterator iter = res.entries.iterator();
        while (iter.hasNext()) {
            iter.advance();
            res.setEntry(iter.key(), iter.value().divide(v[iter.key()]));
        }
        return res;
    }

    /** {@inheritDoc} */
    public FieldVector<T> ebeMultiply(FieldVector<T> v)throws IllegalArgumentException {
        checkVectorDimensions(v.getDimension());
        SparseFieldVector<T> res = new SparseFieldVector<T>(this);
        OpenIntToFieldHashMap<T>.Iterator iter = res.entries.iterator();
        while (iter.hasNext()) {
            iter.advance();
            res.setEntry(iter.key(), iter.value().multiply(v.getEntry(iter.key())));
        }
        return res;
    }

    /** {@inheritDoc} */
     public FieldVector<T> ebeMultiply(T[] v) throws IllegalArgumentException {
        checkVectorDimensions(v.length);
        SparseFieldVector<T> res = new SparseFieldVector<T>(this);
        OpenIntToFieldHashMap<T>.Iterator iter = res.entries.iterator();
        while (iter.hasNext()) {
            iter.advance();
            res.setEntry(iter.key(), iter.value().multiply(v[iter.key()]));
        }
        return res;
    }

     /** {@inheritDoc} */
     public T[] getData() {
        T[] res = buildArray(virtualSize);
        OpenIntToFieldHashMap<T>.Iterator iter = entries.iterator();
        while (iter.hasNext()) {
            iter.advance();
            res[iter.key()] = iter.value();
        }
        return res;
     }

     /** {@inheritDoc} */
     public int getDimension() {
        return virtualSize;
    }

     /** {@inheritDoc} */
     public T getEntry(int index) throws MatrixIndexException {
        checkIndex(index);
        return entries.get(index);
   }

     /** {@inheritDoc} */
     public Field<T> getField() {
        return field;
    }

     /** {@inheritDoc} */
     public FieldVector<T> getSubVector(int index, int n)
            throws MatrixIndexException {
        checkIndex(index);
        checkIndex(index + n - 1);
        SparseFieldVector<T> res = new SparseFieldVector<T>(field,n);
        int end = index + n;
        OpenIntToFieldHashMap<T>.Iterator iter = entries.iterator();
        while (iter.hasNext()) {
            iter.advance();
            int key = iter.key();
            if (key >= index && key < end) {
                res.setEntry(key - index, iter.value());
            }
        }
        return res;
    }

     /** {@inheritDoc} */
     public FieldVector<T> mapAdd(T d) {
        return copy().mapAddToSelf(d);
   }

     /** {@inheritDoc} */
     public FieldVector<T> mapAddToSelf(T d) {
        for (int i = 0; i < virtualSize; i++) {
            setEntry(i, getEntry(i).add(d));
        }
        return this;
    }

     /** {@inheritDoc} */
     public FieldVector<T> mapDivide(T d) {
        return copy().mapDivideToSelf(d);
    }

     /** {@inheritDoc} */
     public FieldVector<T> mapDivideToSelf(T d) {
        OpenIntToFieldHashMap<T>.Iterator iter = entries.iterator();
        while (iter.hasNext()) {
            iter.advance();
            entries.put(iter.key(), iter.value().divide(d));
        }
        return this;
   }

     /** {@inheritDoc} */
     public FieldVector<T> mapInv() {
        return copy().mapInvToSelf();
   }

     /** {@inheritDoc} */
     public FieldVector<T> mapInvToSelf() {
        for (int i = 0; i < virtualSize; i++) {
            setEntry(i, field.getOne().divide(getEntry(i)));
        }
        return this;
   }

     /** {@inheritDoc} */
     public FieldVector<T> mapMultiply(T d) {
        return copy().mapMultiplyToSelf(d);
    }

     /** {@inheritDoc} */
     public FieldVector<T> mapMultiplyToSelf(T d) {
        OpenIntToFieldHashMap<T>.Iterator iter = entries.iterator();
        while (iter.hasNext()) {
            iter.advance();
            entries.put(iter.key(), iter.value().multiply(d));
        }
        return this;
   }

     /** {@inheritDoc} */
     public FieldVector<T> mapSubtract(T d) {
        return copy().mapSubtractToSelf(d);
    }

     /** {@inheritDoc} */
     public FieldVector<T> mapSubtractToSelf(T d) {
        return mapAddToSelf(field.getZero().subtract(d));
    }

     /**
      * Optimized method to compute outer product when both vectors are sparse.
      * @param v vector with which outer product should be computed
      * @return the square matrix outer product between instance and v
      * @throws IllegalArgumentException if v is not the same size as {@code this}
      */
    public FieldMatrix<T> outerProduct(SparseFieldVector<T> v)
            throws IllegalArgumentException {
        checkVectorDimensions(v.getDimension());
        SparseFieldMatrix<T> res = new SparseFieldMatrix<T>(field, virtualSize, virtualSize);
        OpenIntToFieldHashMap<T>.Iterator iter = entries.iterator();
        while (iter.hasNext()) {
            iter.advance();
            OpenIntToFieldHashMap<T>.Iterator iter2 = v.entries.iterator();
            while (iter2.hasNext()) {
                iter2.advance();
                res.setEntry(iter.key(), iter2.key(), iter.value().multiply(iter2.value()));
            }
        }
        return res;
    }

    /** {@inheritDoc} */
    public FieldMatrix<T> outerProduct(T[] v) throws IllegalArgumentException {
        checkVectorDimensions(v.length);
        FieldMatrix<T> res = new SparseFieldMatrix<T>(field, virtualSize, virtualSize);
        OpenIntToFieldHashMap<T>.Iterator iter = entries.iterator();
        while (iter.hasNext()) {
            iter.advance();
            int row = iter.key();
            FieldElement<T>value = iter.value();
            for (int col = 0; col < virtualSize; col++) {
                res.setEntry(row, col, value.multiply(v[col]));
            }
        }
        return res;
     }

    /** {@inheritDoc} */
    public FieldMatrix<T> outerProduct(FieldVector<T> v)
    throws IllegalArgumentException {
        if(v instanceof SparseFieldVector<?>)
            return outerProduct((SparseFieldVector<T>)v);
        else
            return outerProduct(v.toArray());
    }

    /** {@inheritDoc} */
    public FieldVector<T> projection(FieldVector<T> v)
    throws IllegalArgumentException {
        checkVectorDimensions(v.getDimension());
        return v.mapMultiply(dotProduct(v).divide(v.dotProduct(v)));
    }

    /** {@inheritDoc} */
    public FieldVector<T> projection(T[] v) throws IllegalArgumentException {
        checkVectorDimensions(v.length);
        return projection(new SparseFieldVector<T>(field,v));
    }

    /** {@inheritDoc} */
    public void set(T value) {
        for (int i = 0; i < virtualSize; i++) {
            setEntry(i, value);
        }
    }

    /** {@inheritDoc} */
    public void setEntry(int index, T value) throws MatrixIndexException {
        checkIndex(index);
        entries.put(index, value);
   }

    /** {@inheritDoc} */
    public void setSubVector(int index, FieldVector<T> v)
            throws MatrixIndexException {
        checkIndex(index);
        checkIndex(index + v.getDimension() - 1);
        setSubVector(index, v.getData());
    }

    /** {@inheritDoc} */
    public void setSubVector(int index, T[] v) throws MatrixIndexException {
        checkIndex(index);
        checkIndex(index + v.length - 1);
        for (int i = 0; i < v.length; i++) {
            setEntry(i + index, v[i]);
        }

    }

    /**
     * Optimized method to subtract SparseRealVectors.
     * @param v The vector to subtract from <code>this</code>
     * @return The difference of <code>this</code> and <code>v</code>
     * @throws IllegalArgumentException If the dimensions don't match
     */
    public SparseFieldVector<T> subtract(SparseFieldVector<T> v) throws IllegalArgumentException{
        checkVectorDimensions(v.getDimension());
        SparseFieldVector<T> res = (SparseFieldVector<T>)copy();
        OpenIntToFieldHashMap<T>.Iterator iter = v.getEntries().iterator();
        while (iter.hasNext()) {
            iter.advance();
            int key = iter.key();
            if (entries.containsKey(key)) {
                res.setEntry(key, entries.get(key).subtract(iter.value()));
            } else {
                res.setEntry(key, field.getZero().subtract(iter.value()));
            }
        }
        return res;
    }

    /** {@inheritDoc} */
    public FieldVector<T> subtract(FieldVector<T> v)
           throws IllegalArgumentException {
        if(v instanceof SparseFieldVector<?>)
            return subtract((SparseFieldVector<T>)v);
        else
            return subtract(v.toArray());
    }

    /** {@inheritDoc} */
    public FieldVector<T> subtract(T[] v) throws IllegalArgumentException {
        checkVectorDimensions(v.length);
        SparseFieldVector<T> res = new SparseFieldVector<T>(this);
        for (int i = 0; i < v.length; i++) {
            if (entries.containsKey(i)) {
                res.setEntry(i, entries.get(i).subtract(v[i]));
            } else {
                res.setEntry(i, field.getZero().subtract(v[i]));
            }
        }
        return res;
    }

    /** {@inheritDoc} */
    public T[] toArray() {
        return getData();
    }

    /**
     * Check if an index is valid.
     *
     * @param index
     *            index to check
     * @exception MatrixIndexException
     *                if index is not valid
     */
    private void checkIndex(final int index) throws MatrixIndexException {
        if (index < 0 || index >= getDimension()) {
            throw new MatrixIndexException(LocalizedFormats.INDEX_OUT_OF_RANGE,
                                           index, 0, getDimension() - 1);
        }
    }

    /**
     * Check if instance dimension is equal to some expected value.
     *
     * @param n
     *            expected dimension.
     * @exception IllegalArgumentException
     *                if the dimension is inconsistent with vector size
     */
    protected void checkVectorDimensions(int n) throws IllegalArgumentException {
        if (getDimension() != n) {
            throw MathRuntimeException.createIllegalArgumentException(
                    LocalizedFormats.VECTOR_LENGTH_MISMATCH,
                    getDimension(), n);
        }
    }


    /** {@inheritDoc} */
    public FieldVector<T> add(FieldVector<T> v) throws IllegalArgumentException {
        if (v instanceof SparseFieldVector<?>) {
            return add((SparseFieldVector<T>)v);
        } else {
            return add(v.toArray());
        }
    }

    /** Build an array of elements.
     * @param length size of the array to build
     * @return a new array
     */
    @SuppressWarnings("unchecked") // field is type T
    private T[] buildArray(final int length) {
        return (T[]) Array.newInstance(field.getZero().getClass(), length);
    }


    /** {@inheritDoc} */
    @Override
    public int hashCode() {
        final int prime = 31;
        int result = 1;
        result = prime * result + ((field == null) ? 0 : field.hashCode());
        result = prime * result + virtualSize;
        OpenIntToFieldHashMap<T>.Iterator iter = entries.iterator();
        while (iter.hasNext()) {
            iter.advance();
            int temp = iter.value().hashCode();
            result = prime * result + temp;
        }
        return result;
    }


    /** {@inheritDoc} */
    @Override
    public boolean equals(Object obj) {

        if (this == obj) {
            return true;
        }

        if (!(obj instanceof SparseFieldVector<?>)) {
            return false;
        }

        @SuppressWarnings("unchecked") // OK, because "else if" check below ensures that
                                       // other must be the same type as this
        SparseFieldVector<T> other = (SparseFieldVector<T>) obj;
        if (field == null) {
            if (other.field != null) {
                return false;
            }
        } else if (!field.equals(other.field)) {
            return false;
        }
        if (virtualSize != other.virtualSize) {
            return false;
        }

        OpenIntToFieldHashMap<T>.Iterator iter = entries.iterator();
        while (iter.hasNext()) {
            iter.advance();
            T test = other.getEntry(iter.key());
            if (!test.equals(iter.value())) {
                return false;
            }
        }
        iter = other.getEntries().iterator();
        while (iter.hasNext()) {
            iter.advance();
            T test = iter.value();
            if (!test.equals(getEntry(iter.key()))) {
                return false;
            }
        }
        return true;
    }


}